PROCHECK v.3.5

Programs to check the Stereochemical Quality of Protein Structures

Operating manual

Roman A Laskowski, Malcolm W MacArthur, David K Smith, David T Jones, E Gail Hutchinson, A Louise Morris, David S Moss & Janet M Thornton

April 1998

Contents

• 1. Introduction
• 2. How to run PROCHECK
• 3. Input requirements
• 4. PROCHECK outputs
• 5. Customizing the PROCHECK plots
• 6. Viewing G-factors in 3D

• References

• Appendix A - Stereochemical parameters
• Appendix B - Brookhaven PDB file format
• Appendix C - Program descriptions
• Appendix D - Residue-by-residue listing
• Appendix E - G-factors

• Sample plots

• Acknowledgements

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