: Class BuildJembossForm

org.emboss.jemboss.gui.form
Class BuildJembossForm

java.lang.Object
  |
  +--org.emboss.jemboss.gui.form.BuildJembossForm

All Implemented Interfaces:

java.awt.event.ActionListener, java.util.EventListener

public class BuildJembossForm

extends java.lang.Object

implements java.awt.event.ActionListener

Responsible for displaying the graphical representation of the ACD EMBOSS files. Generates & runs command lines and display results.

Author:

T. J. Carver

Field Summary

protected static javax.swing.JPanel	advSection
protected static javax.swing.JPanel	inpSection
protected static javax.swing.JPanel	outSection
protected static OutputSequenceAttributes	outSeqAttr
protected static javax.swing.JPanel	reqdSection

Constructor Summary

BuildJembossForm(int i, java.lang.String[] allDes, java.lang.String[] db, java.lang.String[] allAcd, java.lang.String[] envp, java.lang.String cwd, java.lang.String embossBin, java.lang.String acdDirToParse, boolean withSoap, javax.swing.JPanel p2, uk.ac.mrc.hgmp.embreo.EmbreoParams mysettings, java.util.Hashtable acdStore, javax.swing.JFrame f)

Method Summary

void	actionPerformed(java.awt.event.ActionEvent ae) Action events Exit, Help, GO, & Show results
void	attach(int app, javax.swing.JPanel p3, javax.swing.Box fieldPane)
java.lang.String	checkParameters(ParseAcd parseAcd, int numofFields, java.util.Hashtable filesToMove)
java.lang.String	filesForSoap(java.lang.String fn, java.lang.String options, java.lang.String val, java.util.Hashtable filesToMove)
java.util.Hashtable	getacdStore()
java.lang.String	getAcdText() Get the contents of an ACD file in the form of a String.
java.lang.String	getCommand() Get the command line for the Standalone version.
java.lang.String	getCommand(java.util.Hashtable filesToMove) Get the command line for the SOAP version.
byte[]	getPNGByte(java.lang.String pngFiles)

Methods inherited from class java.lang.Object

, clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

outSeqAttr

protected static OutputSequenceAttributes outSeqAttr

advSection

protected static javax.swing.JPanel advSection

reqdSection

protected static javax.swing.JPanel reqdSection

outSection

protected static javax.swing.JPanel outSection

inpSection

protected static javax.swing.JPanel inpSection

Constructor Detail

BuildJembossForm

public BuildJembossForm(int i,
                        java.lang.String[] allDes,
                        java.lang.String[] db,
                        java.lang.String[] allAcd,
                        java.lang.String[] envp,
                        java.lang.String cwd,
                        java.lang.String embossBin,
                        java.lang.String acdDirToParse,
                        boolean withSoap,
                        javax.swing.JPanel p2,
                        uk.ac.mrc.hgmp.embreo.EmbreoParams mysettings,
                        java.util.Hashtable acdStore,
                        javax.swing.JFrame f)

Method Detail

attach

public void attach(int app,
                   javax.swing.JPanel p3,
                   javax.swing.Box fieldPane)

actionPerformed

public void actionPerformed(java.awt.event.ActionEvent ae)

Action events Exit, Help, GO, & Show results

Specified by:

actionPerformed in interface java.awt.event.ActionListener

getPNGByte

public byte[] getPNGByte(java.lang.String pngFiles)

checkParameters

public java.lang.String checkParameters(ParseAcd parseAcd,
                                        int numofFields,
                                        java.util.Hashtable filesToMove)

filesForSoap

public java.lang.String filesForSoap(java.lang.String fn,
                                     java.lang.String options,
                                     java.lang.String val,
                                     java.util.Hashtable filesToMove)

getCommand

public java.lang.String getCommand()

Get the command line for the Standalone version.

Parameters:

Hashtable - of the files to be transferrred

Returns:

String command line to use

getCommand

public java.lang.String getCommand(java.util.Hashtable filesToMove)

Get the command line for the SOAP version.

Parameters:

Hashtable - of the files to be transferrred

Returns:

String command line to use

getAcdText

public java.lang.String getAcdText()

Get the contents of an ACD file in the form of a String.

Parameters:

String - of the ACD file name

String - representation of the ACD

getacdStore

public java.util.Hashtable getacdStore()